rs33892774 SNP Detail

Summary

• ID
  rs33892774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137264130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                 A TTTGTGTGTA TTTGTCATGT ATATGTGGTT
  TGTATGTGTC TTATGTATAT GTGGTTTGTA TGTGTATGTG TATATGTTAT ATTTATGTGA
  TTTGTGTGTG TGTGTTATGT GAGTTTTGTG TGTGTTATAC TTATGTGATT TCTATGTGTT
  ATATGTATGG TGTGTGTGTT ACATGTATGC AGTATGCATT GTGTACTATG TGTATACAGT
  R
  TGTGTGTGCT CGGTGTATGC AGTATGTATG TGTGCTATGT GTGTGTATAT GTGTATGTGC
  ATTTGTGTGG TACATGCATG TTGAATGTAC AGGTATGTGT ATGCAAACAC CAAAGCAGCC
  CACCAGATAT CTTCCTTTGC TGCCCTCTAC CTTAGTGTCT TGAGACAGGG TCTCTCACTA
  ACAGGAAGCT TGTTGTTTTA GTACACTGGC TTGTTAGCCA GCAGATCCGC AGGATCCACT
  GTCTCTGGCC CGAGTGCAGT TACAGGCACA CATGGCTCCT CCCAGCTTTT TACACGAGTA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45780898	mCV24574537	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33892774					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137264130 () rs orientation: forward

Symbol	Name	Function Class
Gm57304	predicted gene, 57304	within coordinates
Rr110481	regulatory region 110481	1471 bp proximal
Rr127510	regulatory region 127510	1931 bp distal
Rr127511	regulatory region 127511	528 bp distal
Tssr1710	transcription start site region 1710	1918 bp upstream
Tssr1711	transcription start site region 1711	1510 bp downstream
Tssr1712	transcription start site region 1712	1496 bp downstream
Tssr1713	transcription start site region 1713	1461 bp downstream
Tssr1714	transcription start site region 1714	97 bp downstream