rs33892891 SNP Detail

Summary

• ID
  rs33892891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137264275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTGTATGTGT ATGTGTATAT GTTATATTTA TGTGATTTGT GTGTGTGTGT TATGTGAGTT
  TTGTGTGTGT TATACTTATG TGATTTCTAT GTGTTATATG TATGGTGTGT GTGTTACATG
  TATGCAGTAT GCATTGTGTA CTATGTGTAT ACAGTATGTG TGTGCTCGGT GTATGCAGTA
  TGTATGTGTG CTATGTGTGT GTATATGTGT ATGTGCATTT GTGTGGTACA TGCATGTTGA
  ATGTACAGGT ATGTGTATGC AAACACCAAA GCAGCCCACC AGATATCTTC CTTTGCTGCC
  Y
  TCTACCTTAG TGTCTTGAGA CAGGGTCTCT CACTAACAGG AAGCTTGTTG TTTTAGTACA
  CTGGCTTGTT AGCCAGCAGA TCCGCAGGAT CCACTGTCTC TGGCCCGAGT GCAGTTACAG
  GCACACATGG CTCCTCCCAG CTTTTTACAC GAGTACTGAG TCTATGGACA CCAATCCTCA
  TGCCTGCAAA GCAAGCACCC CAACCTACTG GGCCATCTCT CCAGCCTTGT TCTTGCTCTT
  TTCAAAGAGG ATCTCATGCA GCCCAGAGCA GTCTCCAGCT CACTACATAA GCCAGGATGA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45793969	mCV24574526	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33892891					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137264275 () rs orientation: forward

Symbol	Name	Function Class
Gm57304	predicted gene, 57304	within coordinates
Rr110481	regulatory region 110481	1326 bp proximal
Rr127511	regulatory region 127511	673 bp distal
Tssr1711	transcription start site region 1711	1655 bp downstream
Tssr1712	transcription start site region 1712	1641 bp downstream
Tssr1713	transcription start site region 1713	1606 bp downstream
Tssr1714	transcription start site region 1714	22 bp upstream