rs33892949 SNP Detail

Summary

• ID
  rs33892949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137264142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                    ATT TGTGTGTATT TGTCATGTAT ATGTGGTTTG TATGTGTCTT
  ATGTATATGT GGTTTGTATG TGTATGTGTA TATGTTATAT TTATGTGATT TGTGTGTGTG
  TGTTATGTGA GTTTTGTGTG TGTTATACTT ATGTGATTTC TATGTGTTAT ATGTATGGTG
  TGTGTGTTAC ATGTATGCAG TATGCATTGT GTACTATGTG TATACAGTAT GTGTGTGCTC
  R
  GTGTATGCAG TATGTATGTG TGCTATGTGT GTGTATATGT GTATGTGCAT TTGTGTGGTA
  CATGCATGTT GAATGTACAG GTATGTGTAT GCAAACACCA AAGCAGCCCA CCAGATATCT
  TCCTTTGCTG CCCTCTACCT TAGTGTCTTG AGACAGGGTC TCTCACTAAC AGGAAGCTTG
  TTGTTTTAGT ACACTGGCTT GTTAGCCAGC AGATCCGCAG GATCCACTGT CTCTGGCCCG
  AGTGCAGTTA CAGGCACACA TGGCTCCTCC CAGCTTTTTA CACGAGTACT GAGTCTATGG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45801860	mCV24574536	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33892949					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137264142 () rs orientation: forward

Symbol	Name	Function Class
Gm57304	predicted gene, 57304	within coordinates
Rr110481	regulatory region 110481	1459 bp proximal
Rr127510	regulatory region 127510	1943 bp distal
Rr127511	regulatory region 127511	540 bp distal
Tssr1710	transcription start site region 1710	1930 bp upstream
Tssr1711	transcription start site region 1711	1522 bp downstream
Tssr1712	transcription start site region 1712	1508 bp downstream
Tssr1713	transcription start site region 1713	1473 bp downstream
Tssr1714	transcription start site region 1714	85 bp downstream