rs33893309 SNP Detail

Summary

• ID
  rs33893309
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114294827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG ACACCTAGGG TTTCCACGTG
  K
  GTAACCCTGG CAAAGCCTGG CATTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
ss45844651	mCV24686162	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
ss149107482	ENSMUSSNP980522	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss321652055	CHEV_5_114606775	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
rs33893309					SNP	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114294827 () rs orientation: forward

Symbol	Name	Function Class
Acacb	acetyl-Coenzyme A carboxylase beta	within coordinates
Rr108154	regulatory region 108154	1627 bp distal
Rr108155	regulatory region 108155	574 bp proximal
Rr120008	regulatory region 120008	107 bp proximal
Rr120009	regulatory region 120009	479 bp proximal
Tssr48071	transcription start site region 48071	1333 bp downstream
Tssr48072	transcription start site region 48072	1299 bp downstream
Tssr48073	transcription start site region 48073	1251 bp downstream