rs33894279 SNP Detail

Summary

• ID
  rs33894279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30816806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCAGGTATT CTGAGCTGTG CAAGGGAAGG AAAGGCAGAC
  AGTGACCCTC CGGGCCCAAC CCTGAATAGA ATGGGATAGA CTAGAGTCCC TGCCTTAGGC
  Y
  CCCGGGCCCC CGAGATTAGA GAGGGCTGTG GACTGGGCTC CCCCCCCCCC GCCCCGAGTC
  TGAATGAGAG GCCTCTAACT ACAGGGTACC TATGGGACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46003913	mCV24562304	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss322139450	CHEV_7_31902400	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33894279					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30816806 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	1257 bp distal
Rr645022	regulatory region 645022	1601 bp distal
Rr645023	regulatory region 645023	128 bp distal
Rr645024	regulatory region 645024	1120 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71934	transcription start site region 71934	477 bp upstream