rs33894375 SNP Detail

Summary

• ID
  rs33894375
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15655135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCC TCAATGGACT TCAGGGGTGC
  R
  GAATCCATTC AGCAAGCACT TTTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46014718	mCV24772094	ABI	CRAMUS_MOUSE	f	SNP		G	A				A	G
ss60971320	NES16156029	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G		G	G	A		G	A		G
ss148376368	ENSMUSSNP5851271	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
ss322108413	CHEV_7_16506559	CHEVERUD	SCREENING_POP	f	SNP											A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33894375					SNP	G	G	A	A	A	G	A	G	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60971320	NES16156029	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15655135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18341	CpG island 18341	723 bp proximal
Rr167058	regulatory region 167058	within coordinates
Rr400109	regulatory region 400109	612 bp upstream
Selenow	selenoprotein W	within coordinates
Tssr70679	transcription start site region 70679	1096 bp upstream
Tssr70680	transcription start site region 70680	518 bp upstream
Tssr70681	transcription start site region 70681	419 bp upstream
Tssr70682	transcription start site region 70682	1092 bp downstream
Tssr70683	transcription start site region 70683	1125 bp downstream
Tssr70684	transcription start site region 70684	1151 bp downstream