rs33894627 SNP Detail

Summary

• ID
  rs33894627
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30429425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCTCTTCTCG CTCATCCGAG AACTTTGAAC CCCGCCCTGA ACGCAAGGTG ATCGGCGCAG
  AGACAAGAGG GCAAAGCTGT GCGCATTCTC GTTTTTATTT CATTGTTGAC CCGGTGGCGG
  CGCCTTTGAG TGGAAGCCGA AGTCAGGAAC GCGAGGTGCG CAGGGGAGCA AGGAGGGGCC
  TTTTGTGTTA CTTCTCTCGG CTAAACATGT AGCGGAGGAG GTCGACCACT CGGTTACTGT
  AGCCATATTC GTTGTCGTAC CTGAGGAGGC GAGGAAGGAG GCGTCAGTGT GTGTGTGTGT
  K
  TGTGTGTGTG TGTATACGTA TACGTGTACG CACTCGCGCG CTCGCCCTCT TGTCAGCCTC
  CCCCACTATC CTCTGGCATC TTTCCCCTTT ACCAGGCGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTACGTGTA CGCACTCGCG CGCTCGCCCT CTTGTCAGCC TCCCCCACTA
  TCCTCTGGCA TCTTTCCCCT TTACCAGGCG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTACG TGTACGCACT CGCGCGCTCG CCCTCTTGTC AGCCTCCCCC ACTATCCTCT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss46041717	mCV25319247	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs33894627					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30429425 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	within coordinates
Gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	within coordinates
Rr400253	regulatory region 400253	141 bp downstream
Rr644901	regulatory region 644901	1084 bp distal
Rr644902	regulatory region 644902	1011 bp distal
Rr644903	regulatory region 644903	361 bp distal
Tmem147	transmembrane protein 147	466 bp upstream
Tmem147os	transmembrane protein 147, opposite strand	within coordinates
Tssr65802	transcription start site region 65802	357 bp downstream
Tssr65803	transcription start site region 65803	241 bp downstream
Tssr65804	transcription start site region 65804	194 bp downstream
Tssr65805	transcription start site region 65805	1174 bp upstream
Tssr71842	transcription start site region 71842	1163 bp upstream
Tssr71843	transcription start site region 71843	547 bp upstream
Tssr71844	transcription start site region 71844	499 bp upstream
Tssr71845	transcription start site region 71845	444 bp upstream