rs33894842 SNP Detail

Summary

• ID
  rs33894842
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:5081328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAG TTTCTTTTTA ACAGATTTTT
  W
  AAAAAGATTT ATTTAATGTA TGTGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46066895	mCV22918323	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss148184609	ENSMUSSNP804308	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss322095911	CHEV_7_5029931	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33894842					SNP	A	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:5081328 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18280	CpG island 18280	1607 bp proximal
Epn1	epsin 1	1906 bp upstream
Rr167875	regulatory region 167875	1272 bp proximal
Tssr64418	transcription start site region 64418	1025 bp upstream
Tssr64419	transcription start site region 64419	1141 bp upstream
Tssr64420	transcription start site region 64420	1885 bp upstream
Tssr64421	transcription start site region 64421	1997 bp upstream
U2af2	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	within coordinates