rs33894987 SNP Detail

Summary

• ID
  rs33894987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:3379213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGA TTGCCTGCTC CAGACTAAGA
  Y
  TCCAGATCTG CTCCCCGCAT CCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss46083653	mCV22729944	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss148165511	ENSMUSSNP2701974	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T		C
ss322091622	CHEV_7_3331006	CHEVERUD	SCREENING_POP	f	SNP					C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33894987					SNP	T	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:3379213 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18205	CpG island 18205			210 bp distal
Cpgi18206	CpG island 18206			1204 bp proximal
Gm72265	predicted gene, 72265			398 bp downstream
Prkcg	protein kinase C, gamma			mRNA-UTR
				Noncoding-Transcript-Variant
Rr641798	regulatory region 641798			1353 bp proximal
Tssr2064	transcription start site region 2064			107 bp upstream
Tssr2065	transcription start site region 2065			186 bp upstream
Tssr2066	transcription start site region 2066			204 bp upstream
Tssr64245	transcription start site region 64245			434 bp downstream
Tssr64246	transcription start site region 64246			306 bp downstream
Tssr64247	transcription start site region 64247			131 bp downstream
Tssr64248	transcription start site region 64248			1301 bp upstream
Tssr64249	transcription start site region 64249			1437 bp upstream
Tssr64250	transcription start site region 64250			1475 bp upstream