rs33895229 SNP Detail

Summary

• ID
  rs33895229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4523915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAT GCCAGGCCAG AGATGAGGAA
  Y
  CTCGGGTCCC AGGCTTATCC GGAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46111392	mCV22879945	ABI	CRAMUS_MOUSE	f	SNP		C	T					C
ss60964946	NES16164647	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		T	T	T		C	T	T	C		C
ss148179418	ENSMUSSNP4464744	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss322094961	CHEV_7_4472518	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33895229					SNP	C	C	T	T	T	C	T	C	T	T	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60964946	NES16164647	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4523915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	611 bp proximal
Rr641975	regulatory region 641975	513 bp proximal
Rr641976	regulatory region 641976	1602 bp proximal
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64334	transcription start site region 64334	1505 bp downstream
Tssr64335	transcription start site region 64335	434 bp downstream
Tssr64336	transcription start site region 64336	754 bp upstream
Tssr64337	transcription start site region 64337	897 bp upstream
Tssr70484	transcription start site region 70484	960 bp downstream
Tssr70485	transcription start site region 70485	1511 bp downstream
Tssr70486	transcription start site region 70486	1883 bp downstream
Tssr70487	transcription start site region 70487	1900 bp downstream