rs33895293 SNP Detail

Summary

• ID
  rs33895293
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:3379400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGATACTGT TCCAACTCTT CCCAGAAACC CCACTTGGTA GTTTTATGCC TTCTCTCTCC
  CTAGACCATT CTGGGGAAAA TAGTCTCATG AGATTGCCTG CTCCAGACTA AGATTCCAGA
  TCTGCTCCCC GCATCCTTCA AGGCTCCTCC TACCTCCACT TCAGTTGTAG AGTTAAGTGG
  GAGTCTGGGC TCAGCGTTCC AGACCACCTC CCTTCCACGC TCTGGGGATT CCTGGCATGC
  ACCAAGAATT CTTTCCCCCT ACTTTTCTCA GTCAGCTTTT GTTCTAGACT TGTTCCAGAA
  Y
  CCCTCAATGC TCACCTGCCC CGTGCATGGC TCCAGCCTTG GTCGGAATCA CACACACACA
  CACACACACA CACACACACA CACACAGCCC TTGTCCTCCG CAGTGCCTGC AACTTTCTGG
  GACTTTCTCA TTCCCCACCC CCTTCCTTTA TCCTCTCCCA CCCAGACACA GCTGCTGGAG
  AATAAATTTG GGATGCTGAT GCTAAAATGT TTGGATGTTT TCTTGTAAAG CTTAGGGGGC
  GAAGTGGGTG CGGAGGTGGG CTGGCTGTAC ATAGAAACAA ACATGGGGGG TGGTGGAGAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46119450	mCV22729943	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33895293					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:3379400 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18205	CpG island 18205			397 bp distal
Cpgi18206	CpG island 18206			1017 bp proximal
Cpgi18207	CpG island 18207			1900 bp proximal
Gm72265	predicted gene, 72265			211 bp downstream
Prkcg	protein kinase C, gamma			mRNA-UTR
				Noncoding-Transcript-Variant
Rr641798	regulatory region 641798			1166 bp proximal
Tssr2064	transcription start site region 2064			68 bp downstream
Tssr2065	transcription start site region 2065			within coordinates
Tssr2066	transcription start site region 2066			17 bp upstream
Tssr64245	transcription start site region 64245			621 bp downstream
Tssr64246	transcription start site region 64246			493 bp downstream
Tssr64247	transcription start site region 64247			318 bp downstream
Tssr64248	transcription start site region 64248			1114 bp upstream
Tssr64249	transcription start site region 64249			1250 bp upstream
Tssr64250	transcription start site region 64250			1288 bp upstream
Tssr64251	transcription start site region 64251			1905 bp upstream