rs33895416 SNP Detail

Summary

• ID
  rs33895416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44130227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCAGTATC ATCTTTTTAG TATTTTCCTC CCCCTTTTCT
  TCTTCCACCA GATCTCTCCT TCACTCCTAC CCATCTTTTA TTCTTCCTTT TTCTCTTCTT
  Y
  TCCATCGTTA ATTCAACTCT TCTTTCCCTT CTGTTCCTCA ATTCTCCTCC TCCCTGCTTC
  TTCATTTCTT TGAATACTAT CCATCTTCAT CCCTCTTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46135207	mCV25286496	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss149112915	ENSMUSSNP2821043	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33895416					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44130227 () rs orientation: forward

Symbol	Name	Function Class
Rr646103	regulatory region 646103	1781 bp proximal
Tssr2227	transcription start site region 2227	1783 bp downstream
Tssr2228	transcription start site region 2228	720 bp downstream
Tssr2229	transcription start site region 2229	445 bp downstream
Tssr2230	transcription start site region 2230	262 bp downstream
Tssr2231	transcription start site region 2231	135 bp downstream
Tssr2232	transcription start site region 2232	38 bp upstream
Tssr2233	transcription start site region 2233	71 bp upstream
Tssr2234	transcription start site region 2234	230 bp upstream
Tssr2235	transcription start site region 2235	864 bp upstream
Tssr66289	transcription start site region 66289	1975 bp downstream
Tssr66290	transcription start site region 66290	1937 bp downstream
Tssr66291	transcription start site region 66291	1911 bp downstream
Tssr66292	transcription start site region 66292	1879 bp downstream
Tssr66293	transcription start site region 66293	1857 bp downstream
Tssr66294	transcription start site region 66294	1833 bp downstream
Tssr66295	transcription start site region 66295	1568 bp downstream
Tssr66296	transcription start site region 66296	1397 bp downstream
Tssr66297	transcription start site region 66297	1373 bp downstream
Tssr66298	transcription start site region 66298	1318 bp downstream
Tssr66299	transcription start site region 66299	1298 bp downstream
Tssr66300	transcription start site region 66300	1275 bp downstream
Tssr66301	transcription start site region 66301	1259 bp downstream
Tssr66302	transcription start site region 66302	1218 bp downstream
Tssr66303	transcription start site region 66303	1209 bp downstream
Tssr66304	transcription start site region 66304	1204 bp downstream
Tssr66305	transcription start site region 66305	1165 bp downstream
Tssr66306	transcription start site region 66306	1111 bp downstream
Tssr66307	transcription start site region 66307	1062 bp downstream
Tssr66308	transcription start site region 66308	1045 bp downstream
Tssr66309	transcription start site region 66309	995 bp downstream
Tssr66310	transcription start site region 66310	926 bp downstream
Tssr66311	transcription start site region 66311	903 bp downstream
Tssr66312	transcription start site region 66312	884 bp downstream
Tssr66313	transcription start site region 66313	874 bp downstream
Tssr66314	transcription start site region 66314	856 bp downstream
Tssr66315	transcription start site region 66315	849 bp downstream
Tssr66316	transcription start site region 66316	784 bp downstream
Tssr66317	transcription start site region 66317	768 bp downstream
Tssr66318	transcription start site region 66318	727 bp downstream
Tssr66319	transcription start site region 66319	699 bp downstream
Tssr66320	transcription start site region 66320	675 bp downstream
Tssr66321	transcription start site region 66321	651 bp downstream
Tssr66322	transcription start site region 66322	635 bp downstream
Tssr66323	transcription start site region 66323	597 bp downstream
Tssr66324	transcription start site region 66324	544 bp downstream
Tssr66325	transcription start site region 66325	503 bp downstream
Tssr66326	transcription start site region 66326	493 bp downstream
Tssr66327	transcription start site region 66327	473 bp downstream
Tssr66328	transcription start site region 66328	455 bp downstream
Tssr66329	transcription start site region 66329	416 bp downstream
Tssr66330	transcription start site region 66330	403 bp downstream
Tssr66331	transcription start site region 66331	389 bp downstream
Tssr66332	transcription start site region 66332	356 bp downstream
Tssr66333	transcription start site region 66333	321 bp downstream
Tssr66334	transcription start site region 66334	315 bp downstream
Tssr66335	transcription start site region 66335	304 bp downstream
Tssr66336	transcription start site region 66336	290 bp downstream
Tssr66337	transcription start site region 66337	274 bp downstream
Tssr66338	transcription start site region 66338	190 bp downstream
Tssr66339	transcription start site region 66339	158 bp downstream
Tssr66340	transcription start site region 66340	91 bp downstream
Tssr66341	transcription start site region 66341	42 bp downstream
Tssr66342	transcription start site region 66342	13 bp downstream
Tssr66343	transcription start site region 66343	8 bp upstream
Tssr66344	transcription start site region 66344	153 bp upstream
Tssr66345	transcription start site region 66345	186 bp upstream
Tssr66346	transcription start site region 66346	242 bp upstream
Tssr66347	transcription start site region 66347	280 bp upstream
Tssr66348	transcription start site region 66348	321 bp upstream
Tssr66349	transcription start site region 66349	345 bp upstream
Tssr66350	transcription start site region 66350	373 bp upstream
Tssr66351	transcription start site region 66351	381 bp upstream
Tssr66352	transcription start site region 66352	417 bp upstream
Tssr66353	transcription start site region 66353	491 bp upstream
Tssr66354	transcription start site region 66354	505 bp upstream
Tssr66355	transcription start site region 66355	532 bp upstream
Tssr66356	transcription start site region 66356	549 bp upstream
Tssr66357	transcription start site region 66357	563 bp upstream
Tssr66358	transcription start site region 66358	575 bp upstream
Tssr66359	transcription start site region 66359	601 bp upstream
Tssr66360	transcription start site region 66360	613 bp upstream
Tssr66361	transcription start site region 66361	639 bp upstream
Tssr66362	transcription start site region 66362	671 bp upstream
Tssr66363	transcription start site region 66363	688 bp upstream
Tssr66364	transcription start site region 66364	721 bp upstream
Tssr66365	transcription start site region 66365	741 bp upstream
Tssr66366	transcription start site region 66366	761 bp upstream
Tssr66367	transcription start site region 66367	789 bp upstream
Tssr66368	transcription start site region 66368	811 bp upstream
Tssr66369	transcription start site region 66369	845 bp upstream
Tssr66370	transcription start site region 66370	887 bp upstream
Tssr66371	transcription start site region 66371	1312 bp upstream
Tssr66372	transcription start site region 66372	1475 bp upstream
Tssr66373	transcription start site region 66373	1765 bp upstream
Tssr66374	transcription start site region 66374	1823 bp upstream
Tssr66375	transcription start site region 66375	1834 bp upstream
Tssr66376	transcription start site region 66376	1847 bp upstream
Tssr66377	transcription start site region 66377	1886 bp upstream
Tssr66378	transcription start site region 66378	1908 bp upstream
Tssr66379	transcription start site region 66379	1920 bp upstream
Tssr66380	transcription start site region 66380	1953 bp upstream
Tssr66381	transcription start site region 66381	1972 bp upstream
Tssr66382	transcription start site region 66382	1996 bp upstream
Tssr72201	transcription start site region 72201	1852 bp upstream
Tssr72202	transcription start site region 72202	995 bp upstream
Tssr72203	transcription start site region 72203	615 bp upstream
Tssr72204	transcription start site region 72204	15 bp upstream