rs33895653 SNP Detail

Summary

• ID
  rs33895653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85328349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTC AGAAGGCTCT GGGCAAGTCG
  Y
  GTGGCGCCCT TTCTCACTGC CTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46163578	mCV22697332	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C
ss60644341	NES16270701	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	C	C	C	C	C	C	T	C	C
ss145390220	ENSMUSSNP31941	ENSEMBL	ENSEMBL_Sanger	f	SNP			C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33895653					SNP	T	T	C	T	T	T	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60644341	NES16270701	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85328349 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1a	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit			Intron
				Noncoding-Transcript-Variant
Cpgi20697	CpG island 20697			817 bp distal
Cpgi20698	CpG island 20698			within coordinates
Gm64375	predicted gene, 64375			within coordinates
Rr666538	regulatory region 666538			1216 bp distal
Rr666539	regulatory region 666539			275 bp proximal
Tssr78406	transcription start site region 78406			343 bp downstream
Tssr78407	transcription start site region 78407			280 bp downstream
Tssr78408	transcription start site region 78408			243 bp downstream