rs33895874 SNP Detail

Summary

• ID
  rs33895874
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:120153381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CACAGCACTT ATCACCCCAG GAGAAAGAGG AGCTAGACCA CACAGGCTGG GAGGAGGAAA
  GTCTTCATGA CCTTGGTCCC CACTGCACAC CCTGCTGCTA GAGCTGAGAC ACCCTCTGCG
  CACACATCTA CGTGCATGCA GTGTGCACCC ACACACTGAC AAACAGGTGC ATACTCACGT
  ACAGGCATAA ACACATGGAA CTCCCTGGAA GCCAGCCCTC CCTAGGAAAG CTCCTTCCAC
  TTCCTCCCAG GGACAGGAAG TAACTGTGAC TTTGAGGGTT TCTTGGGACA ATTGCCAAAG
  Y
  TCATGACCCA CACTTACCCT CCTCCTCTCC AGTTTTCAAA ATGTACACTG GCCATGTGTC
  ACCTCCCTAT TGCCCTTGGA AGAAATAGCA AGCTCCTCTA GTGGCTACTG AGTCTCTTGT
  TTTCACAACC CTCAAACCTC CCTCCCTCTG GCTTTACCTA GCAGTCACTC AAACTGCCAA
  CCACAGGGCC TTTGCACCTA CATGCTGTCC TCTTGCCAGC CTTCTCTCTC CTCCACTCTT
  AGCTTTCTGG TCTGAGTCCA TTTGCTATCT CCTCTGGGAC AGCCCGGAAA GTCTGTTCCC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss46200883	mCV22963530	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss145803208	ENSMUSSNP667101	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs33895874					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:120153381 () rs orientation: forward

Symbol	Name	Function Class
Gm32006	predicted gene, 32006	within coordinates
Gm56837	predicted gene, 56837	1273 bp downstream
Gm64145	predicted gene, 64145	1083 bp upstream
Rr401165	regulatory region 401165	1446 bp upstream
Rr671124	regulatory region 671124	1793 bp distal
Rr671125	regulatory region 671125	1848 bp distal
Rr671126	regulatory region 671126	within coordinates
Rr671127	regulatory region 671127	942 bp proximal
Rr671128	regulatory region 671128	1094 bp proximal
Tssr79690	transcription start site region 79690	711 bp downstream
Tssr79691	transcription start site region 79691	684 bp downstream
Tssr83120	transcription start site region 83120	1640 bp upstream
Tssr83121	transcription start site region 83121	49 bp upstream