rs33896025 SNP Detail

Summary

• ID
  rs33896025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85392195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGC GGAATAGCCT GAGTAGCATC
  R
  TTGGGACCTC TGCGACTTGG AAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46223134	mCV24192581	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
ss145391647	ENSMUSSNP5526320	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss322751245	CHEV_8_87189465	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33896025					SNP	A	A	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85392195 () rs orientation: forward

Symbol	Name	Function Class
4930447I22Rik	RIKEN cDNA 4930447I22 gene	540 bp upstream
Cpgi20703	CpG island 20703	1055 bp distal
Cpgi20704	CpG island 20704	within coordinates
Gm26664	predicted gene, 26664	within coordinates
Gm50464	predicted gene, 50464	within coordinates
Rr368565	regulatory region 368565	1366 bp downstream
Rr368566	regulatory region 368566	408 bp downstream
Tssr2627	transcription start site region 2627	428 bp downstream
Tssr78425	transcription start site region 78425	1328 bp downstream
Tssr78426	transcription start site region 78426	1309 bp downstream
Tssr78427	transcription start site region 78427	1001 bp downstream
Tssr82110	transcription start site region 82110	1611 bp upstream