rs33896974 SNP Detail

Summary

• ID
  rs33896974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45015125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCCAATAGTT TCCCCCTCCC TCCCCCCTCC TTTTCTCCTT CCCCCTCTCC ACATTTTAAC
  TTTTAGACAC TTCTCTTTGG TCCGTTGGCT TCTTGAGTTT TGGGTTGCCT TTGTCCCAAA
  GGTAGGAGTC TTCTTTAACA AGGTTCAACC CTTAGAAGCC TGAGATCGTG TCTTTTCCCC
  CTAAGAGCGA CAGGATGGGG AATCACAGTC CTTAGCCCTC ACAGCCGTGA GGCTCAAGGA
  GGGCCGTTCT TGCCATATCA ACTCTCTGAG AGACGATAAC AGCCAGCTGA TAATGAATAT
  Y
  AACTTGCCGT GACTAATCAG AAGGAAGTGA CCAAGGCCTG CAAGCTATTC TGCAGGATAA
  GAGTGGGCTC CCGCCTGTTG TGAGTGATGT TTTATAGCCT GGGAAACTAG GAACTGAGCT
  GACAGGGCCC AGATTCCTGG CCCAAAGAAT GAGATCCGAG TTGTGTCTGT GCCTCTGGGT
  AGAGACATCA CACACAGATC GTACGATTCC CATCCACAGG AAATGTCCAG GAAAGGACAG
  AGACGTACAC CATCTCTCCC TTGGGAGTCA ATGATTATCT GTGAATCCAA TAGGCCTGTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46348868	mCV24046724	ABI	CRAMUS_MOUSE	f	SNP		C						T
ss61388965	NES16766750	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33896974					SNP	C	C	T	T	T	C	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388965	NES16766750	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45015125 () rs orientation: forward

Symbol	Name	Function Class
Jaml	junction adhesion molecule like	within coordinates
Rr677840	regulatory region 677840	within coordinates
Rr677841	regulatory region 677841	1892 bp proximal
Tssr84725	transcription start site region 84725	943 bp downstream
Tssr84726	transcription start site region 84726	9 bp upstream
Tssr84727	transcription start site region 84727	39 bp upstream
Tssr84728	transcription start site region 84728	67 bp upstream