rs33897772 SNP Detail

Summary

• ID
  rs33897772
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:13776048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCCTCTGA AGGAATAGGA GCAACTGCAT TTCTTTTCAG
  TTTAAAAAGA AAATGGTTTC AGAAATCTTA GCTGATCTTG TTCCCTTTGG AAGAGAAAAA
  M
  AATGTTACAG GCAAACTCTA AAGTTATAAA AAAAAACATA CTTATTTCCT GACACACCCT
  GAACCTTGAC CCGGCCACTC TCTCCCTCCT TAGCCTCAT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46419159	mCV23534354	ABI	CRAMUS_MOUSE	f	SNP		C						A		C
ss60536935	NES16556556	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	A	A		A	C	A	A		C	A		A
ss145197253	ENSMUSSNP653218	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								C
ss325305943	CHEV_17_13748652	CHEVERUD	SCREENING_POP	f	SNP													C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33897772					SNP	C	C	C	C	C	A	A	A	A	C	A	A	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60536935	NES16556556	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:13776048 () rs orientation: forward

Symbol	Name	Function Class
2700054A10Rik	RIKEN cDNA 2700054A10 gene	1692 bp upstream
Gm49936	predicted gene, 49936	within coordinates
Rr392310	regulatory region 392310	119 bp upstream
Rr522380	regulatory region 522380	within coordinates
Rr522381	regulatory region 522381	593 bp proximal