rs33898322 SNP Detail

Summary

• ID
  rs33898322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3036050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTTCAAGTC GTCAAGTGGA TGTTTCTCAT TTTCCAAGAT ATTCAGTTTT CTTGCCATAT
  TCCATGAACT ACAGTGGACA TTTCTAAATT TTCCACTTAT TTCAGTTTTC CTCGCCATAT
  TCCAGGTCCT AGAATGTGCA TTTCTCATTT TTCAATTTTT TCAGTGATTT TGTCATTTTT
  CAAGTCGTCA AGTGGATGTT TCTCATTTTC CATGATTTTC AGTTTTTTTG CCATATAACA
  TTTCCTACTG TGGACATTTC TAAATTTTCC ATCTTTTTCA GTTTTCCTTG CCATATTTCA
  Y
  GTCCTTTAGT GTGTATTACT CATTTTCCGT GATTTTCAGT TTTCTTGTCA TATTACAGGT
  CCTACAGTGT GCATTTCTCA TTTTTCACGT TTTTCAGTGA TTTCGACATT TTTAAAGTCG
  TCAAGTGGAT TTTTCACATT TTCATGATTT TCTGTATTCT TGCCATATTC CATGTCCTAC
  AGTGGACATT TCTAAATGTT CCACCATTTT CAGTTTTCCT CGCCATATTT CACATCCTAA
  AGTGTGTATT CCTCATTTTC CGTGATTTTC AGATTTCTCG CTATATTCCA GGTCCTACAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss46428687	mCV23588806	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs33898322					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3036050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	within coordinates
Cpgi21329	CpG island 21329	1958 bp proximal
Rr673613	regulatory region 673613	1960 bp distal
Rr673614	regulatory region 673614	1100 bp distal
Rr673615	regulatory region 673615	440 bp distal
Rr673616	regulatory region 673616	611 bp proximal
Rr673617	regulatory region 673617	1411 bp proximal
Tssr83597	transcription start site region 83597	1841 bp downstream
Tssr83598	transcription start site region 83598	313 bp downstream
Tssr83599	transcription start site region 83599	147 bp downstream
Tssr83600	transcription start site region 83600	20 bp upstream
Tssr83601	transcription start site region 83601	265 bp upstream
Tssr83602	transcription start site region 83602	306 bp upstream
Tssr83603	transcription start site region 83603	348 bp upstream
Tssr83604	transcription start site region 83604	1280 bp upstream
Tssr83605	transcription start site region 83605	1963 bp upstream
Tssr88025	transcription start site region 88025	128 bp upstream
Tssr88026	transcription start site region 88026	43 bp downstream
Tssr88027	transcription start site region 88027	297 bp downstream
Tssr88028	transcription start site region 88028	336 bp downstream
Tssr88029	transcription start site region 88029	1994 bp downstream