rs33898349 SNP Detail

Summary

• ID
  rs33898349
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3090539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAACTGAAAA TCATGGAAAA TGAAAAAAAC ACACTGTAGG ATGTGAAAAA TGGCAAAAAA
  CACGTGAAAA AGATGAGAAA TACAGTCTAT AGGACTTGGA TTATGACGAG AAAACTAAAA
  AACGTGGAAA ATGAGATACA AACAATGTGG GACCTGAAAT ATGGCAAGAA ACACTGAAAA
  ACATGGAAAA TGAGAAATGC ACATTGTAGG ACATGGAGTA TGGCATGACA ATTGAAAAAC
  GTAAAAAGTA AGACAAAAAC AGTTTGACCT GGAATATGGC GAGAAACACT GAAGAAGATG
  R
  AATATGAGAA ATGCTCACTG TATGACCTGG AGTATGGATA GAAACCTGAA AATCATGGAA
  AAAGAGAAAC ATACATTCTA GGACATGAAA TATGGCAGGA AACATCAAAA ACGTGAAAAA
  TGAGAAATAC ACACTGTAGA ACCTGGAATA AGTCAAGAAA ACTGAAAAGC AGGGAAAATG
  AAAAAGACAC ATTGTGAGAC ATGAAATATA GCGAGAAACA CTGAAAAATG TGGAAAATGA
  GAAAGGCACA CTATAGGACC TGGAATATGG CTACAAAACC GTATATCGTG GAAAATGAGA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss46429236	mCV22615859	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs33898349					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3090539 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13988	CpG island 13988	within coordinates
Rr588148	regulatory region 588148	within coordinates
Tssr36318	transcription start site region 36318	997 bp downstream
Tssr36319	transcription start site region 36319	739 bp downstream
Tssr36320	transcription start site region 36320	229 bp downstream
Tssr36321	transcription start site region 36321	111 bp downstream
Tssr36322	transcription start site region 36322	42 bp downstream
Tssr36323	transcription start site region 36323	132 bp upstream
Tssr36324	transcription start site region 36324	237 bp upstream
Tssr40800	transcription start site region 40800	952 bp upstream
Tssr40801	transcription start site region 40801	719 bp upstream
Tssr40802	transcription start site region 40802	305 bp upstream
Tssr40803	transcription start site region 40803	259 bp upstream