rs33898384 SNP Detail

Summary

• ID
  rs33898384
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3090383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGAACGTGA AAAAAGAGAA TTGTACTCTG TAGGACCTAG AAAATGTCAA GAAACACTGA
  AAAATGTGGA AAATGAGACA CACACACTGT AGGACCTGGA ATATGGCGAG AAATTAAAAA
  AAAATGGAAA ATCAGACACA AACACAGTTT GACCTGGTAT ATGGCAAGAA ACAGTCAAAA
  ACGTAGGACC TGGAACATGC AAGAAAACTG ACCAACAAGG AAAATTAGAA ATTCACATGG
  TAGGACCTGG AATATGGAGA GAAAAACTTA AAACAACGTT AAAAAAGAGA AATGGACACT
  S
  TAGGACCTGG AATATGGCGA GAAACATTGA AAAACATGAA AAATGAGAAA TGCACACTGT
  AGGATCTCGA ATATGGAAAT AAAACTGACC AACATTGAAA ATGAGAAAAT CACCTGGTAA
  GACCTGGGAT AATGCCAGAA ACACTGAAAA ACGTGAAAAA AGAGAAATGT ACACTATAGG
  ACCGGGAAAA TGGCGAGAAA ACTGAAAAAC GTGAAAAATG AGAAACACAC ACTGTAGGAC
  CTGGAATATG GCGAGAAAAT AGAAAAACGT GGAAAATGAG ACACGAACAA TGTATGACCT
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46429805	mCV22546363	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33898384					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3090383 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13988	CpG island 13988	within coordinates
Rr588148	regulatory region 588148	within coordinates
Tssr36318	transcription start site region 36318	841 bp downstream
Tssr36319	transcription start site region 36319	583 bp downstream
Tssr36320	transcription start site region 36320	73 bp downstream
Tssr36321	transcription start site region 36321	within coordinates
Tssr36322	transcription start site region 36322	90 bp upstream
Tssr36323	transcription start site region 36323	288 bp upstream
Tssr36324	transcription start site region 36324	393 bp upstream
Tssr40800	transcription start site region 40800	796 bp upstream
Tssr40801	transcription start site region 40801	563 bp upstream
Tssr40802	transcription start site region 40802	149 bp upstream
Tssr40803	transcription start site region 40803	103 bp upstream