rs33898410 SNP Detail

Summary

• ID
  rs33898410
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3072476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGTGCCTACA AAGTGCTGGA ATTAAAGGCT TGCTCCACCA CTGAATGTTG GGTGTTCTAC
  GTCTTTCCTT GGTCACTGTG TCTTTTCTCA GCTGTAAAGC CCTAAGTAAG ACATGTAGTT
  TGATCTAGGT CCCCCAGAGG TACACAGTAA GACCTTTTCT ACAAAAAACT ACAACACATT
  AAAATAATTT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTGTTTCT TATTTTCTTT
  CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTTTTT CTTGTTTTTT CAATTCTTTC
  S
  TTCCTGTAGA ACCCCTCAGT TTTAGCCCTA GTACTTTTTA GTGAAATGGC CTCAAACTCA
  GATACCTGCC TGCCTCTGCC TCTACCACTG CCTCTAGAGT GCTGGCATTA AAGGCTTGTG
  CCACCTCTGA ATGTTGGGTT TTCTATATAT TTTTTTCGAC TTGATGTCTG TTCTCAGCTG
  TAAAACCCTA ACATGTAATT GTAGTGATAT CTAGGGCCCA CAGAGCTAAC AGTGAGACTT
  TTTCAATAAG AAAAATAAAA CACATAAAAA TAAACTTTTT CTTTCTTTCT TTCTTTCTTT
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46430332	mCV23587791	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33898410					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3072476 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	788 bp proximal
Gm74511	predicted gene, 74511	within coordinates
Rr369110	regulatory region 369110	1345 bp upstream
Rr402381	regulatory region 402381	1251 bp downstream
Rr441449	regulatory region 441449	within coordinates
Rr441450	regulatory region 441450	443 bp proximal
Rr441451	regulatory region 441451	850 bp proximal
Rr441452	regulatory region 441452	1009 bp proximal
Rr441453	regulatory region 441453	1556 bp proximal
Rr441454	regulatory region 441454	1948 bp proximal
Tssr100004	transcription start site region 100004	1523 bp upstream
Tssr100005	transcription start site region 100005	1567 bp upstream
Tssr106442	transcription start site region 106442	1429 bp downstream