rs33898948 SNP Detail

Summary

• ID
  rs33898948
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3036311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTCCACCTT TTTCATTTTT CCTTGCCATA TTTCACGTCC TAAAGTGTGT ATTTCTCATT
  TTCCGTGATT TTCAGTTTTC TCGCCATATT ACAGGTCCTA CATTATGCAT TTCTCATATT
  TCACGTTTTT CACTGATTTC GTCATTTTTC AAGTCGTCAA GTGGATGTTT CTCATTTTCC
  AAGATATTCA GTTTTCTTGC CATATTCCAT GAACTACAGT GGACATTTCT AAATTTTCCA
  CTTATTTCAG TTTTCCTCGC CATATTCCAG GTCCTAGAAT GTGCATTTCT CATTTTTCAA
  K
  TTTTTCAGTG ATTTTGTCAT TTTTCAAGTC GTCAAGTGGA TGTTTCTCAT TTTCCATGAT
  TTTCAGTTTT TTTGCCATAT AACATTTCCT ACTGTGGACA TTTCTAAATT TTCCATCTTT
  TTCAGTTTTC CTTGCCATAT TTCATGTCCT TTAGTGTGTA TTACTCATTT TCCGTGATTT
  TCAGTTTTCT TGTCATATTA CAGGTCCTAC AGTGTGCATT TCTCATTTTT CACGTTTTTC
  AGTGATTTCG ACATTTTTAA AGTCGTCAAG TGGATTTTTC ACATTTTCAT GATTTTCTGT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss46440489	mCV23588805	ABI	CRAMUS_MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs33898948					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3036311 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	within coordinates
Cpgi21329	CpG island 21329	1697 bp proximal
Tssr83598	transcription start site region 83598	574 bp downstream
Tssr83599	transcription start site region 83599	408 bp downstream
Tssr83600	transcription start site region 83600	213 bp downstream
Tssr83601	transcription start site region 83601	4 bp upstream
Tssr83602	transcription start site region 83602	45 bp upstream
Tssr83603	transcription start site region 83603	87 bp upstream
Tssr83604	transcription start site region 83604	1019 bp upstream
Tssr83605	transcription start site region 83605	1702 bp upstream
Tssr83606	transcription start site region 83606	1871 bp upstream
Tssr88025	transcription start site region 88025	389 bp upstream
Tssr88026	transcription start site region 88026	183 bp upstream
Tssr88027	transcription start site region 88027	36 bp downstream
Tssr88028	transcription start site region 88028	75 bp downstream
Tssr88029	transcription start site region 88029	1733 bp downstream
Tssr88030	transcription start site region 88030	1872 bp downstream