rs33899152 SNP Detail

Summary

• ID
  rs33899152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3090863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGTAGTATCT GGAATATGTT GAGAAAACTG ACAAACGAGG AAAATGAGAA ACAAACATGG
  TAGGACCTGG AATATGGCTA GAAAACGAAG GAAACATGAA AAATTAGACA CCCAAACTGT
  AGGACCTGTA ATATGGCAAA AAAAACAGAC AAACGAGGAA AATGAGAATC TCACATGGTA
  GGACTTGGAA TATGGTGGGA AACACTGAAA AACGTGAAAA AAGATAAATG TACCCTGAAG
  GACCTGGAAT ATGGCTAGAA AAGTGAGAAA ACCTGGAAAA TGAGACAAAC ACACTGTAGG
  R
  CCGTGAATAT GGCGAGATAC GCTGAAAACG TGGAAAATGA GAAACACACA CTGTAGGTCC
  TGGGATATTG CGAGAAAACT GACAAATTAG GAAAATGAGA ATCTCACATG ATAGGAACTG
  GAATATGGCG AGAAACACTA AGAAATGAGA AAAATGATAA ATGTACACTG TAGGACATGA
  CATATGGCGA GAATACTGAC AAAGGAAAAT GAGAAACTCA CATGGTAGGA ACTGGAATAT
  GTCAAGAAAC ACTGAAAAAC GTGGAAAATG AGAATCAATG TAGGACCTGA AATATTTTGA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46443798	mCV22803649	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33899152					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3090863 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13988	CpG island 13988	within coordinates
Rr588148	regulatory region 588148	within coordinates
Tssr36318	transcription start site region 36318	1321 bp downstream
Tssr36319	transcription start site region 36319	1063 bp downstream
Tssr36320	transcription start site region 36320	553 bp downstream
Tssr36321	transcription start site region 36321	435 bp downstream
Tssr36322	transcription start site region 36322	366 bp downstream
Tssr36323	transcription start site region 36323	176 bp downstream
Tssr36324	transcription start site region 36324	61 bp downstream
Tssr40800	transcription start site region 40800	1276 bp upstream
Tssr40801	transcription start site region 40801	1043 bp upstream
Tssr40802	transcription start site region 40802	629 bp upstream
Tssr40803	transcription start site region 40803	583 bp upstream