rs33899374 SNP Detail

Summary

• ID
  rs33899374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:13776201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGGA GTGCCTTGCT TGGGTGGCCC
  Y
  GCCCAGCCCT CTAATCCCTC CTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46447856	mCV23534358	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss325305944	CHEV_17_13748805	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33899374					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:13776201 () rs orientation: forward

Symbol	Name	Function Class
2700054A10Rik	RIKEN cDNA 2700054A10 gene	1845 bp upstream
Gm49936	predicted gene, 49936	within coordinates
Rr392310	regulatory region 392310	within coordinates
Rr522380	regulatory region 522380	within coordinates
Rr522381	regulatory region 522381	440 bp proximal