rs33899422 SNP Detail

Summary

• ID
  rs33899422
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3090537 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  CATTTTCCAA GTTTTTCAGT TTTCTCGAAT TAATCTAGGT CCTACAGTGT ACATTTCTCC
  TCTTAAACGT TAATCAGTGT TTCAGGCCAT ATTCCAGGTC CTAGAGTGTG TATTTCTCAT
  TTTTCCACGT TTTTCAGTTT TCTTGCCATA TTCCAGGTTC TACAGTGTGT GTATCTCATT
  TTCCACGATT TTCAGTGTTT CTTGCCATAT TCTAGGTCCT ACCAGCTGAT TTTCTCAATT
  TCTGAGTTGG TCAGTTTTCT TGCCATATTC CAGGTCCTAC AGTGTGTGTG TCTCATTTTC
  W
  CGTTTTTCAG TTTTCTTGCC ATAATCCAGG TCCTACTATT TGAGTTGTCA TTTTTCTTGT
  TGGTCAGTTT TCTCGCCATA TTACTACAGT GTGCATTTAT GATTTTTAAC TTTTTCAGTG
  TTTCTCACCA TATTCCAGGT CTTACATTTT GTGTGTCTCA TTTTCCACGT TTTTAGGTTT
  TCTCACCTTA CCCCAGTTCC TACACTAGGC ATTTCTCATT TTCCAGGTTT TTTAGTGGTT
  TTTGCAATAT TCCAGGTCAA ACAGTGTTTG TGTACCATTT TCGACATTTT TCAGTTTTCT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46448630	mCV22760089	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33899422					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3090537 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13988	CpG island 13988	within coordinates
Rr588148	regulatory region 588148	within coordinates
Tssr36318	transcription start site region 36318	995 bp downstream
Tssr36319	transcription start site region 36319	737 bp downstream
Tssr36320	transcription start site region 36320	227 bp downstream
Tssr36321	transcription start site region 36321	109 bp downstream
Tssr36322	transcription start site region 36322	40 bp downstream
Tssr36323	transcription start site region 36323	134 bp upstream
Tssr36324	transcription start site region 36324	239 bp upstream
Tssr40800	transcription start site region 40800	950 bp upstream
Tssr40801	transcription start site region 40801	717 bp upstream
Tssr40802	transcription start site region 40802	303 bp upstream
Tssr40803	transcription start site region 40803	257 bp upstream