rs33899467 SNP Detail

Summary

• ID
  rs33899467
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3090088 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TTACAGGTCA TAAAATGTTT GTGTCTCATT TTCCACTTTT TTCAGCATTC TTGTCATAAT
  CCAGGTATTA CAGTGTGTTT TTCTCATTTT TCACGTTTTT CAGTCTTTCT CGTCATATTT
  CACATCCTAC AGTGTGTGTT TTTTATTTTA CATGATTTTC AGTTTTCTCC CCATACTCCA
  GGTCCTACAG TGTGCAATTC TCATTTTCCA CCTTTTTCAG TGTTTGTCGA CATATTAAAG
  GTCATACAGT GTTTGTATCT CATTTTCCAT GTTTTTCAGC TTTTTCACCA TAATCCAGGT
  M
  CAACACTGAA TTTCTCATTT TTCACATTTT TCAGTCTTTC TCGCCATATG CCTCCTGGTC
  ATGCCATGTT TTTGTCTCAT TTTCCACGTT TTTCAATTTT TTACCATAAT CCAGGTCCTA
  CAGTGTGCAT TTCTCAATTT CCTTTTTTTT CGGTATTCTC ACCATATTCC AGCTCCTACT
  ACGTGCATTT CTCATTTTTC ACGTTTATCA GGTTTCTTGC CATGTTTCAG GTTCTACAGT
  CTAAATTTCT CATTATCCAC GTTTGTCAGT GTTTCGTGCC ATATTCTAGG TCCTACAATG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss46449502	mCV22295235	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs33899467					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3090088 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13988	CpG island 13988	29 bp proximal
Rr588148	regulatory region 588148	within coordinates
Tssr36318	transcription start site region 36318	546 bp downstream
Tssr36319	transcription start site region 36319	288 bp downstream
Tssr36320	transcription start site region 36320	215 bp upstream
Tssr36321	transcription start site region 36321	294 bp upstream
Tssr36322	transcription start site region 36322	385 bp upstream
Tssr36323	transcription start site region 36323	583 bp upstream
Tssr36324	transcription start site region 36324	688 bp upstream
Tssr40800	transcription start site region 40800	501 bp upstream
Tssr40801	transcription start site region 40801	268 bp upstream
Tssr40802	transcription start site region 40802	127 bp downstream
Tssr40803	transcription start site region 40803	184 bp downstream