rs33899598 SNP Detail

Summary

• ID
  rs33899598
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3036057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTCGTCAAGT GGATGTTTCT CATTTTCCAA GATATTCAGT TTTCTTGCCA TATTCCATGA
  ACTACAGTGG ACATTTCTAA ATTTTCCACT TATTTCAGTT TTCCTCGCCA TATTCCAGGT
  CCTAGAATGT GCATTTCTCA TTTTTCAATT TTTTCAGTGA TTTTGTCATT TTTCAAGTCG
  TCAAGTGGAT GTTTCTCATT TTCCATGATT TTCAGTTTTT TTGCCATATA ACATTTCCTA
  CTGTGGACAT TTCTAAATTT TCCATCTTTT TCAGTTTTCC TTGCCATATT TCATGTCCTT
  W
  AGTGTGTATT ACTCATTTTC CGTGATTTTC AGTTTTCTTG TCATATTACA GGTCCTACAG
  TGTGCATTTC TCATTTTTCA CGTTTTTCAG TGATTTCGAC ATTTTTAAAG TCGTCAAGTG
  GATTTTTCAC ATTTTCATGA TTTTCTGTAT TCTTGCCATA TTCCATGTCC TACAGTGGAC
  ATTTCTAAAT GTTCCACCAT TTTCAGTTTT CCTCGCCATA TTTCACATCC TAAAGTGTGT
  ATTCCTCATT TTCCGTGATT TTCAGATTTC TCGCTATATT CCAGGTCCTA CAGTGTGCAT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss46451552	mCV23588813	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs33899598					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3036057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	within coordinates
Cpgi21329	CpG island 21329	1951 bp proximal
Tssr83597	transcription start site region 83597	1848 bp downstream
Tssr83598	transcription start site region 83598	320 bp downstream
Tssr83599	transcription start site region 83599	154 bp downstream
Tssr83600	transcription start site region 83600	13 bp upstream
Tssr83601	transcription start site region 83601	258 bp upstream
Tssr83602	transcription start site region 83602	299 bp upstream
Tssr83603	transcription start site region 83603	341 bp upstream
Tssr83604	transcription start site region 83604	1273 bp upstream
Tssr83605	transcription start site region 83605	1956 bp upstream
Tssr88025	transcription start site region 88025	135 bp upstream
Tssr88026	transcription start site region 88026	36 bp downstream
Tssr88027	transcription start site region 88027	290 bp downstream
Tssr88028	transcription start site region 88028	329 bp downstream
Tssr88029	transcription start site region 88029	1987 bp downstream