rs33899782 SNP Detail

Summary

• ID
  rs33899782
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATGAGAAATA GACACTGTAG GACCTGGAAT ATGGCGAGAA AACTGAAAAT CACGGAATAT
  GAGAAATACA CACTTTAGGA AGTTAAATAA GGCAAGGAAA ACTGAAAAAG GTGGAAAATT
  TAGAAATGTC CACTCTAGGA CATGAAATAT GTCAAGAAAA CTGAAAATCA TGGAAATGAG
  AAACATCCAC ATGAGGACTT GAAAAATGAC GAAATCACTG AAAAACGTGA AAAATGCGAA
  ATGCACACTG TAGGACCTGG AATATGTCAA GAAAACTGAA AATGACGGAA AATGAGAAAT
  M
  CACACTTTAG GACGTGAAAT ATGGCGAGAA GAAATGAAAA GGGTGGAAAA TTTAGAAATG
  TCCTTTGTAG GACGTGGAAT ATGGCGAGAA AACTGAAAAT CACGGAAAAT GAGAAATACA
  TACTTTAGGA CATGAAATAT GGAGAGGAAA ACTGAAAATG GTGGAAAATA AAGAAATGTC
  CACTCTAGGA CTTGGAATAT GGCAAGAAAA CTGAAAATCA TGGAAAATGA GAAACATCCA
  CATGACGACT TGAAAAATGA CGAAATCAGT GAAAAAGTTG AAAAATGAGA AATGCACATT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss46454976	mCV22985790	ABI	CRAMUS_MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs33899782					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050426 () rs orientation: forward

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1900 bp downstream
Tssr4285	transcription start site region 4285	1875 bp upstream
Tssr4286	transcription start site region 4286	1771 bp downstream
Tssr4287	transcription start site region 4287	1736 bp upstream
Tssr4288	transcription start site region 4288	1708 bp downstream
Tssr4289	transcription start site region 4289	1613 bp upstream
Tssr4290	transcription start site region 4290	1606 bp downstream
Tssr4291	transcription start site region 4291	1526 bp upstream
Tssr4292	transcription start site region 4292	1490 bp downstream
Tssr4293	transcription start site region 4293	1455 bp upstream
Tssr4294	transcription start site region 4294	1453 bp downstream
Tssr4295	transcription start site region 4295	1380 bp upstream
Tssr4296	transcription start site region 4296	1417 bp downstream
Tssr4297	transcription start site region 4297	1353 bp upstream
Tssr4298	transcription start site region 4298	1335 bp downstream
Tssr4299	transcription start site region 4299	1295 bp downstream
Tssr4300	transcription start site region 4300	1257 bp downstream
Tssr4301	transcription start site region 4301	1239 bp upstream
Tssr4302	transcription start site region 4302	1227 bp upstream
Tssr4303	transcription start site region 4303	1172 bp downstream
Tssr4304	transcription start site region 4304	1143 bp upstream
Tssr4305	transcription start site region 4305	1074 bp downstream
Tssr4306	transcription start site region 4306	1055 bp upstream
Tssr4307	transcription start site region 4307	1034 bp downstream
Tssr4308	transcription start site region 4308	1002 bp upstream
Tssr4309	transcription start site region 4309	958 bp upstream
Tssr4310	transcription start site region 4310	911 bp downstream
Tssr4311	transcription start site region 4311	883 bp upstream
Tssr4312	transcription start site region 4312	803 bp downstream
Tssr4313	transcription start site region 4313	744 bp upstream
Tssr4314	transcription start site region 4314	732 bp downstream
Tssr4315	transcription start site region 4315	708 bp downstream
Tssr4316	transcription start site region 4316	681 bp upstream
Tssr4317	transcription start site region 4317	605 bp downstream
Tssr4318	transcription start site region 4318	581 bp upstream
Tssr4319	transcription start site region 4319	524 bp upstream
Tssr4320	transcription start site region 4320	460 bp downstream
Tssr4321	transcription start site region 4321	432 bp upstream
Tssr4322	transcription start site region 4322	333 bp downstream
Tssr4323	transcription start site region 4323	298 bp upstream
Tssr4324	transcription start site region 4324	268 bp downstream
Tssr4325	transcription start site region 4325	217 bp downstream
Tssr4326	transcription start site region 4326	179 bp upstream
Tssr4327	transcription start site region 4327	176 bp downstream
Tssr4328	transcription start site region 4328	94 bp downstream
Tssr4329	transcription start site region 4329	96 bp upstream
Tssr4330	transcription start site region 4330	7 bp upstream
Tssr4331	transcription start site region 4331	31 bp downstream
Tssr4332	transcription start site region 4332	137 bp downstream
Tssr4333	transcription start site region 4333	149 bp upstream
Tssr4334	transcription start site region 4334	171 bp downstream
Tssr4335	transcription start site region 4335	318 bp downstream
Tssr4336	transcription start site region 4336	322 bp upstream
Tssr4337	transcription start site region 4337	395 bp downstream