rs33899867 SNP Detail

Summary

• ID
  rs33899867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3090877 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TGTTTCTCCC ATTATTCCAG GTCCTACAAT TGTACATTTC TCATTTTTCA CGTTTTACGG
  TGTTTCTTGC CATATTCCAG GACCTACCAT GTGGTTTTCT CATTTTCCTT GGTGGTCAGT
  TTTCTCGCCA TATTCCATAT CCTACAGTGT GTGTTTTTCA TTTTCCACCT ATTTCAGTGT
  TTCTCGCCAT ATTCCGGGTC CTATCATGTG AGTTTCTAAT TTTTTTCCTT ATCCAGTTTT
  ATCGACATAT TTCACATCCT GCAGATTTTG TGTCTCATTT TCCACGTTTT TCAATTTTTT
  Y
  GCCATAGTCC AGGTCCTACA GTGTGTTTTT CTCATTTGCA CGTTTTTCAG GGTTTCTCTC
  CGTATTGCAG GTCCTTCCAT GTGACTTTCT CATTTTACTC TTTTGTCAGT TTTCTCGCCA
  TAATCCAGGT ACTTCAATGA GTATTTCTCA TTTTCCACGT TTTTCAGTTT TCTGGCCATA
  ATCCAGGTTC TACAGTGTGT TTTTCTCATT TGCACCTTTT TCAGTATTTC TCTCCGTATT
  CCAGGTCCTT CCACGTGACT TTCTCATTTT CCTCCTTTGT CAGTTTTCTC GCTATAATCC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46456695	mCV23621840	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33899867					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3090877 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13988	CpG island 13988	within coordinates
Rr588148	regulatory region 588148	within coordinates
Tssr36318	transcription start site region 36318	1335 bp downstream
Tssr36319	transcription start site region 36319	1077 bp downstream
Tssr36320	transcription start site region 36320	567 bp downstream
Tssr36321	transcription start site region 36321	449 bp downstream
Tssr36322	transcription start site region 36322	380 bp downstream
Tssr36323	transcription start site region 36323	190 bp downstream
Tssr36324	transcription start site region 36324	75 bp downstream
Tssr40800	transcription start site region 40800	1290 bp upstream
Tssr40801	transcription start site region 40801	1057 bp upstream
Tssr40802	transcription start site region 40802	643 bp upstream
Tssr40803	transcription start site region 40803	597 bp upstream