rs33900063 SNP Detail

Summary

• ID
  rs33900063
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3090461 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TCATTTTTAC TGCCATAATC AATGTCTTAC AGTGTATATT TCTTATTTTT CATGTTTTTA
  CTGTTTCTCA CCATATTCCA GGTTCTACAA TATGTGTGTC TATTTTCCAA GTTTTTGAGT
  TTTCTCTCCA TATTCCAGTT CTTACCATGT GAGTTTCCCA TTTTCCCCAT TGGTCAGTTT
  TCTCAACATA TTCCAGGTCC TTCAGTGTCT CTGTATCATT TTCCACGTTT TTCAGTTTTT
  CTTGTCATAT TCTAGGTCCT AAAGTGTGTT TTTCTCTTTT TGCACGTTTG TTAGTTTTCT
  Y
  GCCATATGCC AGTTCATAGA GTGTAAATTT ATCATTTTTC TTGTTTTTCA GTGTTTCTCA
  CCATATTCCA GTTCATAAAA TGTGAGTTTC TCATTTTCCC CTTTTGTCAG TTTTCTTGCA
  ATATTCCAGG TCCTACAGTG TGTTTTTCTT ATTTTGCAGG TTTTTCAGTG ATTCTCGCTA
  TATTTCAGTT CCTACCATCT GAGTTTCTCA TTTTCAGTCG TCACTTTTCA CGGATATATC
  AGGTCCTACA GTGTACATTT ATCATTTTTC TCGTTTTTCA ATGTTTCTCG ACATATTCCA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46459962	mCV25139261	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33900063					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3090461 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13988	CpG island 13988	within coordinates
Rr588148	regulatory region 588148	within coordinates
Tssr36318	transcription start site region 36318	919 bp downstream
Tssr36319	transcription start site region 36319	661 bp downstream
Tssr36320	transcription start site region 36320	151 bp downstream
Tssr36321	transcription start site region 36321	33 bp downstream
Tssr36322	transcription start site region 36322	12 bp upstream
Tssr36323	transcription start site region 36323	210 bp upstream
Tssr36324	transcription start site region 36324	315 bp upstream
Tssr40800	transcription start site region 40800	874 bp upstream
Tssr40801	transcription start site region 40801	641 bp upstream
Tssr40802	transcription start site region 40802	227 bp upstream
Tssr40803	transcription start site region 40803	181 bp upstream