rs33900090 SNP Detail

Summary

• ID
  rs33900090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:74850923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGTGATTTT CAGTTTTATT GTCATACTCC AGGTCCTACA GTGTGCATTC CTCATTTTCC
  ACATTTTTTA GTCTTCTGCG CCATATTCCA GGTGCTACAG TGTTTGTTTC TCATTTTCCA
  CGTTTTTTTT TTTCAGTTTT CTTGTCATAA TCCAGGTCCT ACAGCGTTTA TTTCTCATTT
  TTCACTTTTT TGAGTGTTTC TCACCATATT TCACGTCCTA CAGTGTGTGT TTCTTATTTT
  GTACGTTTTT CAGTGTTTCT CACCATATTC TATGTCCTAC CATGACAGTT TCTCTTTTTC
  Y
  GTTTTTGTCA GTTTTTCGCC ATGATCCAGG TCCTACAGTG TGTGTGTCTC ATTTTCCACG
  TTTTTCAGGG TTTCTTGCCA TATTCCAGGT CCTCCAGTTT GTGTTTCTCA TTTTGCATGT
  ATTTCATTTT TTCGCTGTAT TCCATGTTTT ACAGTGTGCA TTTCTCATTT TGCACCTCTT
  TCAGTGTTTC TCACCATATT ACAGGTCATA CAGTGTTTGC GTCTCTTTTT CCACAATTTT
  CATTTTTGTC GCCATACTCC AGGTCCTACA GTGTGCATTA ACCCTTTTTC ACATTTTTCA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss46460407	mCV22646153	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33900090					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:74850923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4766	CpG island 4766	within coordinates
Tssr113890	transcription start site region 113890	274 bp downstream
Tssr113891	transcription start site region 113891	within coordinates
Tssr113892	transcription start site region 113892	71 bp upstream
Tssr113893	transcription start site region 113893	121 bp upstream
Tssr113894	transcription start site region 113894	174 bp upstream
Tssr113895	transcription start site region 113895	232 bp upstream
Tssr116673	transcription start site region 116673	178 bp upstream