rs33900545 SNP Detail

Summary

• ID
  rs33900545
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3027478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTCATTTTCC GTGATTTTCA GTTTTCTCAC CATGTTCTAG GTCCTACAGT TTGCATTTCT
  CATTTTTCAG GTTTTTCAGT GATTTCTTCA TTTTTTCAAG TCGTCAAGTG GATGTTTCAC
  ATTTTCCATG ATTTTCTGTT TTCTTGCCAT ATTCCACGTC CTACAGTGGA CATTTCTAAA
  ATTTCCACCT TTATCAGTTT TCCTCGCCAT ATTTCATGTC CTAAAGAGTG TATTTTTCAT
  TTTCCGTTAT TTTCAGATTT CTCGCCATAT TCCAGGTCCT ACAGTGTGCA TTTCTCATTT
  W
  TCACGTTTTT CAGTGATTTC GTCATTTTTT AACTCGTCAA GTGGATGTTT CTCATTTTCC
  ATGATTTTCA GTTTCCTTGC AATATTCCAT GTCCCACTTG GACATTTCTA AATTTTCCAC
  CTTTTTTCAG TTTTCCTCGC CATATTTCAC TATCTAAAGT GTGAATTTCT CATTTTCGTG
  ATTTTCAGTT TTCTGACCAT ATTCTAGGTC CTACAGTGTG CATTTCTCAT TTTTCACGTT
  TTCAGTGATT TCTTCATTTT TCAAGTCGTC AAGTGGATGT TTCTCTTTTT CCATGATTTT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46468622	mCV22905716	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33900545					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3027478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21323	CpG island 21323	1570 bp distal
Cpgi21324	CpG island 21324	298 bp distal
Cpgi21325	CpG island 21325	1909 bp proximal
Rr673606	regulatory region 673606	948 bp distal
Rr673607	regulatory region 673607	468 bp distal
Rr673608	regulatory region 673608	within coordinates
Rr673609	regulatory region 673609	403 bp proximal
Rr673610	regulatory region 673610	1403 bp proximal
Tssr83578	transcription start site region 83578	1988 bp downstream
Tssr83579	transcription start site region 83579	1946 bp downstream
Tssr83580	transcription start site region 83580	1850 bp downstream
Tssr83581	transcription start site region 83581	1605 bp downstream
Tssr83582	transcription start site region 83582	983 bp downstream
Tssr83583	transcription start site region 83583	796 bp downstream
Tssr83584	transcription start site region 83584	709 bp downstream
Tssr83585	transcription start site region 83585	333 bp downstream
Tssr83586	transcription start site region 83586	10 bp downstream
Tssr83587	transcription start site region 83587	277 bp upstream
Tssr83588	transcription start site region 83588	1893 bp upstream
Tssr88018	transcription start site region 88018	1920 bp upstream
Tssr88019	transcription start site region 88019	758 bp upstream
Tssr88020	transcription start site region 88020	690 bp upstream
Tssr88021	transcription start site region 88021	66 bp upstream
Tssr88022	transcription start site region 88022	within coordinates
Tssr88023	transcription start site region 88023	1924 bp downstream