rs33900630 SNP Detail

Summary

• ID
  rs33900630
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3027666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTTTTTCAGT TTTCCTCGTC ATAATTCATG TCCTAAAGTG TGTATTTCTC TTTTTTTGTG
  ATTTTCAGTT TTCTTGCCAT ATTCCAGGTC CTACAGTGTG CATTTCTCAT TTTTCCCTTT
  TTTCAGTGTT TTCGTCATTT TTCAAGTGGT CAAGTGGATG TTTCTCATTT TCCATGATTT
  TCATTTTTTT TGCCATATTC CATGTCCTAC AGTAGACATT TCTAAATTTT CCACTTTTTT
  CAGTTTTCCT CGCCATATTT CATGTCCTAA ATTGTGTATT TCTCATTTTC CTTGATTTTC
  W
  GTTTTCCTGC CATATTCCAG GTCCTACAGT GTGCATTTCT CATTTTTCAT GTTTTTCAGT
  GATTTCATCA TTTTTCAAGT CGTCAAGTGG AAGTTTCTCA TTTCCATGAT TTTCAGTTTT
  CTTGCCATAT TCCATGTACT GTAGTGGACA TTTCGAATTT TCCATCTTTT TCAGTTTTTC
  TCGCCATATT TCACGTCCTA AAGTGTGTAT TTCTCATTTT CCGTAATTTT TCAGTTTTCT
  CGCCATATTA CAGGTCCTAC AGGGTGCATT TCTCATTTTT CATGTTTTTC AGTGATTTCA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss46470169	mCV25198685	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33900630					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3027666 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21323	CpG island 21323	1758 bp distal
Cpgi21324	CpG island 21324	486 bp distal
Cpgi21325	CpG island 21325	1721 bp proximal
Rr673606	regulatory region 673606	1136 bp distal
Rr673607	regulatory region 673607	656 bp distal
Rr673608	regulatory region 673608	6 bp distal
Rr673609	regulatory region 673609	215 bp proximal
Rr673610	regulatory region 673610	1215 bp proximal
Tssr83581	transcription start site region 83581	1793 bp downstream
Tssr83582	transcription start site region 83582	1171 bp downstream
Tssr83583	transcription start site region 83583	984 bp downstream
Tssr83584	transcription start site region 83584	897 bp downstream
Tssr83585	transcription start site region 83585	521 bp downstream
Tssr83586	transcription start site region 83586	198 bp downstream
Tssr83587	transcription start site region 83587	89 bp upstream
Tssr83588	transcription start site region 83588	1705 bp upstream
Tssr83589	transcription start site region 83589	1989 bp upstream
Tssr88019	transcription start site region 88019	946 bp upstream
Tssr88020	transcription start site region 88020	878 bp upstream
Tssr88021	transcription start site region 88021	254 bp upstream
Tssr88022	transcription start site region 88022	178 bp upstream
Tssr88023	transcription start site region 88023	1736 bp downstream