rs33901230 SNP Detail

Summary

• ID
  rs33901230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156311913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAAGGTTTC TAAAGGTGAC ACCCGTCTGT AGAAATCCCT
  GGGGCCCCAG AGACCAGGAG GGGCTGGTTT CCCAGTTTTC CTAGGATCCT GTGAGAAAGG
  Y
  ATACCTTGGG AGTTTGCACC AGCTGCAGCA CCCAAGAATC CAGGAGCCTT GCCCCAACCC
  TGGTAGAAGC TGCACATATA TAGCAGATCC CAGCCCACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss46789941	NES10982281	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	T	T		C	T	C
ss148128827	ENSMUSSNP2080788	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321446047	CHEV_4_155601565	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs33901230					SNP	T	C	C	T	C	T	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789941	NES10982281	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156311913 () rs orientation: forward

Symbol	Name	Function Class
Klhl17	kelch-like 17	1879 bp downstream
Plekhn1	pleckstrin homology domain containing, family N member 1	within coordinates
Rr606703	regulatory region 606703	1061 bp proximal
Rr606704	regulatory region 606704	1096 bp proximal
Tssr45022	transcription start site region 45022	1048 bp downstream
Tssr45023	transcription start site region 45023	1084 bp downstream
Tssr45024	transcription start site region 45024	1339 bp downstream