rs33901235 SNP Detail

Summary

• ID
  rs33901235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156312168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGCCCTGG CTCCTCTCAA GTATTGCCAT AGACTTGGGA
  AAAGGGGAGG GGAAAGGTGT GTTTTTCCTC GGCGAGTCAT TAAACCCACA GAATGTTTAG
  Y
  CTTCTGATCT CAGGAGGGTT AGCTGGCTTC TTGCTCTATG GGGATGGGTG CCCGCCTAGA
  TGGCAACATG GCAGCTGTGG GCTCCACAGT GACCCTGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46789956	NES10982286	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T	C	T	C	C		C	C	C	C
ss148128837	ENSMUSSNP5128052	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss321446049	CHEV_4_155601820	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs33901235					SNP	C	T	T	C	T	C	T	C	T	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789956	NES10982286	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156312168 () rs orientation: forward

Symbol	Name	Function Class
Klhl17	kelch-like 17	1624 bp downstream
Plekhn1	pleckstrin homology domain containing, family N member 1	within coordinates
Rr606703	regulatory region 606703	806 bp proximal
Rr606704	regulatory region 606704	841 bp proximal
Tssr45022	transcription start site region 45022	793 bp downstream
Tssr45023	transcription start site region 45023	829 bp downstream
Tssr45024	transcription start site region 45024	1084 bp downstream