rs33901237 SNP Detail

Summary

• ID
  rs33901237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156312304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAAAGGG GAGGGGAAAG
  GTGTGTTTTT CCTCGGCGAG TCATTAAACC CACAGAATGT TTAGCCTTCT GATCTCAGGA
  GGGTTAGCTG GCTTCTTGCT CTATGGGGAT GGGTGCCCGC CTAGATGGCA ACATGGCAGC
  TGTGGGCTCC ACAGTGACCC TGGGGGACTG AGGCCCGCAC TATGCTATTT ACCAGAAGCT
  Y
  CCACACAGGT GTTCGGCCCG CAAGACCCAG GCTGGGGCGG TGGAGGTTGA GGGCGGGGCC
  ACTGTCCCTT TGGATATATC GCAGACTGGG CTGGCTCTGC CTGCTCAGCA CTCACTCAGT
  GCTGGTCTTG GTTTCACTCT CAGCCTAGAC TCTTGAGCGA GCTCCCAGGG AGGAGCCAAC
  TTCCTCATCT TGCTTTGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46789962	NES10982288	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33901237					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789962	NES10982288	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156312304 () rs orientation: forward

Symbol	Name	Function Class
Klhl17	kelch-like 17	1488 bp downstream
Plekhn1	pleckstrin homology domain containing, family N member 1	within coordinates
Rr606703	regulatory region 606703	670 bp proximal
Rr606704	regulatory region 606704	705 bp proximal
Tssr45022	transcription start site region 45022	657 bp downstream
Tssr45023	transcription start site region 45023	693 bp downstream
Tssr45024	transcription start site region 45024	948 bp downstream