rs33901243 SNP Detail

Summary

• ID
  rs33901243
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156313488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGCAGG GATTCTCCAG
  TTGCCCCTCC CCTGCCAGGG TGCACACATC CTGTTTCCAC ACGAGTCCCA GCTGTCTGAG
  TCACTGGTGA CTGTCGGGGG TGTGTTGCTC ACTCTCAGCT GCTCAAGAGG TGCAATTTCA
  TATAAAGGGA GAGAGACCTG AACCCTCCCC CAGCTTCTCT TCATTCTGGG CCAACCCTTA
  Y
  CCAGAATGAA GTCAGGGTCC CCAAAGTTTA ATCAAATGCA AGAAAGAGGC CACGTGCCTC
  TCGGGTTCCT AAGGCTATCT TCCTCATTGG CCCCACACTC CCAGATCCCA GGAGCCTCAA
  GACTAGGATG ACAGCCAGTC TCTGTTCCAC TTGAATGCAG AAGTGCCATT TTGCAGCCCC
  AGACGTTAAG GTAGCGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46789995	NES10982302	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33901243					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789995	NES10982302	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156313488 () rs orientation: forward

Symbol	Name	Function Class
Klhl17	kelch-like 17	304 bp downstream
Mir7658	microRNA 7658	1028 bp downstream
Plekhn1	pleckstrin homology domain containing, family N member 1	489 bp upstream
Rr606703	regulatory region 606703	35 bp distal
Rr606704	regulatory region 606704	458 bp distal
Tssr45022	transcription start site region 45022	493 bp upstream
Tssr45023	transcription start site region 45023	461 bp upstream
Tssr45024	transcription start site region 45024	222 bp upstream