rs33901245 SNP Detail

Summary

• ID
  rs33901245
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156313639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGACCTGA ACCCTCCCCC
  AGCTTCTCTT CATTCTGGGC CAACCCTTAT CCAGAATGAA GTCAGGGTCC CCAAAGTTTA
  ATCAAATGCA AGAAAGAGGC CACGTGCCTC TCGGGTTCCT AAGGCTATCT TCCTCATTGG
  CCCCACACTC CCAGATCCCA GGAGCCTCAA GACTAGGATG ACAGCCAGTC TCTGTTCCAC
  K
  TGAATGCAGA AGTGCCATTT TGCAGCCCCA GACGTTAAGG TAGCGTTTGA GTCTGGCTGC
  ACACTTGCCT GTAGACCTTC ACTCTGTTGT CCAGAGAGGA GCCAAAGATG TGCTGTAGAG
  CCACAGCAGA AGGTACAAAG GGGGCCAAAG ATGGACATTC AGCCTCAGGC CCATGGAGCC
  CAAGAAACAT GTTTATTGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46790001	NES10982305	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33901245					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46790001	NES10982305	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156313639 () rs orientation: forward

Symbol	Name	Function Class
Klhl17	kelch-like 17	153 bp downstream
Mir7658	microRNA 7658	877 bp downstream
Plekhn1	pleckstrin homology domain containing, family N member 1	640 bp upstream
Rr606703	regulatory region 606703	186 bp distal
Rr606704	regulatory region 606704	609 bp distal
Tssr45022	transcription start site region 45022	644 bp upstream
Tssr45023	transcription start site region 45023	612 bp upstream
Tssr45024	transcription start site region 45024	373 bp upstream