rs33902347 SNP Detail

Summary

• ID
  rs33902347
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:95298886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCAGTA CAGGGGAACA
  CCAGTGCCAA GAAGTGGGAG TGGGTGGGTA GGGGAGTGGG GTGGAGGGTA TGGGGAACTT
  TTGGGATAGC ATTGGAAATG TAAATGAAGA AAATACCTAA TAAAAAATAA ATAAAATAAA
  ATGGAAAAAA AGAAAGAAAA AGAAATTGTA GACAAACGAT CAGAGGTACA ATGTCAGAAC
  W
  ATTTCTTGTA TACCTTTTGG TTTTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTTG GGTATAGCCA GATTTCCATG CTTTCCATTG GGCCAAGTTA GGGGGTTTTC
  TTTTACCTTG CCTTAAGAAG AAAAAATAGT ATTCTGACTC ACCAGCTTTT CAAAAATGCT
  GTATTCATGT GATTCTGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss49782671	NES12409868	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs33902347					SNP	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49782671	NES12409868	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:95298886 () rs orientation: forward

Symbol	Name	Function Class
Rr8044	regulatory region 8044	1011 bp distal
Tssr161564	transcription start site region 161564	274 bp upstream
Tssr161565	transcription start site region 161565	291 bp upstream
Tssr161566	transcription start site region 161566	323 bp upstream
Tssr161567	transcription start site region 161567	432 bp upstream
Vsig4	V-set and immunoglobulin domain containing 4	within coordinates