rs33908034 SNP Detail

Summary

• ID
  rs33908034
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:63404261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGA GTCTACCTTC TGTCTCCATT
  R
  GGTTACCTGC CCTGGGACAG CTATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48253573	NES11760231	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	G	G	A	G	G	G	A	G	G
ss144828376	ENSMUSSNP1583763	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33908034					SNP	G	G	A	G	A	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48253573	NES11760231	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:63404261 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19187	CpG island 19187	237 bp proximal
Otud7a	OTU domain containing 7A	within coordinates
Rr157436	regulatory region 157436	1661 bp distal
Rr157437	regulatory region 157437	461 bp distal
Rr157438	regulatory region 157438	1340 bp proximal
Rr167925	regulatory region 167925	139 bp proximal
Rr171198	regulatory region 171198	1965 bp distal