rs33908035 SNP Detail

Summary

• ID
  rs33908035
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:63404310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCTTAACA TTCGTGGTAT GCAAGTTCTG AGTCTACCTT
  CTGTCTCCAT TAGGTTACCT GCCCTGGGAC AGCTATTTTT GAATTTCTGA GCTCTGAACT
  Y
  TGCTGGTGCC TCCAGCCTCC TGGCAGGCAG ATGAGGTGCC TGTCACCATG CCTCTCTCTT
  CTGTTTCAGC TGTGATCCCT CTGACGGATT CGGAACACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48253574	NES11760232	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	C	T	T	C	C	T	C
ss144828379	ENSMUSSNP2861582	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33908035					SNP	C	T	C	C	C	C	C	T	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48253574	NES11760232	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:63404310 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19187	CpG island 19187	188 bp proximal
Otud7a	OTU domain containing 7A	within coordinates
Rr157436	regulatory region 157436	1710 bp distal
Rr157437	regulatory region 157437	510 bp distal
Rr157438	regulatory region 157438	1291 bp proximal
Rr167925	regulatory region 167925	90 bp proximal