rs36240066 SNP Detail

Summary

• ID
  rs36240066
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34465600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATCATTG GACATCACTG
  TCTTATAGGC TGAATGGCTT GTGCCACAAA TTTTTGACAT CATGTAGGAC TGTTAGTCAT
  GCCTTGAGAA AGAACTATCC ATTGATACTT TTCATTGGCT TTTTAAAATT AACAGAAGGA
  ACACTGAAAG CATGGCTCAA GTATCCTGAA CCTGTCCAAG TTACTGTGGT GTTACATAAG
  W
  ATAGGAGTAT CTCTCGGGCA CAGAATTACC TATACAGAGC CCTTGTCCCA AGAGTGACTA
  CAGTGACTCA GCTGGGACCC GCTCACAGCC ATCTGCAGTG CCGAGGTCCC TGATAGCCTG
  TTACAGAGGA GTTAAGGGCT ATTGCACCAT GATATGGGGG GTTGGCATCA AGCAGAGCCA
  ACAGTCCTCA GTCAGATCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51237527	NES14285846	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36240066					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51237527	NES14285846	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34465600 () rs orientation: forward

Symbol	Name	Function Class
Gm37233	predicted gene, 37233	within coordinates