rs36240524 SNP Detail

Summary

• ID
  rs36240524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162536896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAACAAAGG TGTTTGGGAA ATTTAAAGAT
  AAAAACAATC AGCACAGAGT TGGCAAAAGA CCAAATAAGT TACAGTAATT TCTTATAATT
  CACATAAGCA TCTCATCATT TCCTAGAAGT AGAAGATGTG TCTATGAGTA AAGCTTAAGA
  Y
  AAAAAAGACA TGATAGAGAA AGTCAACTAA CTTCTCAACA ACCAATTCTC AACAAGTGTA
  CTACAAAGAA AAAAGGAACT AAGGTAAGTT CCTATGCTTT ATGTATTTTG TTTTATATTA
  TATTATCAGA TCCTGAAAGA TAAGATATCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51397210	NES14464325	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	C		T
ss320083512	CHEV_1_164639458	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36240524					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51397210	NES14464325	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162536896 () rs orientation: forward

Symbol	Name	Function Class
Prrc2c	proline-rich coiled-coil 2C	within coordinates
Tssr9722	transcription start site region 9722	1018 bp upstream
Tssr14643	transcription start site region 14643	1484 bp upstream
Tssr14644	transcription start site region 14644	261 bp downstream
Tssr14645	transcription start site region 14645	1089 bp downstream
Tssr14646	transcription start site region 14646	1131 bp downstream
Tssr14647	transcription start site region 14647	1175 bp downstream
Tssr14648	transcription start site region 14648	1424 bp downstream