rs36240638 SNP Detail

Summary

• ID
  rs36240638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151996604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGAACTA AGCTGGAATG
  ATACCTCAGC ACTCTGGAGT AAATTTTTCC TTCTTCAACT AAATGCATAG CTTCTTCGTA
  GAAAGGGCAG GGACAAAAAG ACTCCAGGCT GAAGGTCTGC TGCGCTTCTC TCTGCTCTGC
  GAGCTAAGGA CACACAGGAC GGATTACACT GGAGTAAGAG GAACTGTAAA AAACCCAGGA
  Y
  TTCAATACTA CCAAAATATG CTACATGTGA CTACCCCACA GAAATCACTA ACATTTTATG
  TAACAAAAAC CTAAATTCAC TTTCCTTCAA CATTCAATAG TTAAAGTTCA AGAGCAGCTT
  GAATGAACAT GGGCGTGATC CTGTCTCAGC AAACAAACAA ACAGACAAAC AAACAAAGGA
  ACAGAAGAGC CACGCGCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51060110	NES13425192	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36240638					SNP	T	C	T	C	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060110	NES13425192	PERLEGEN	MM_PANEL	f	SNP	C/T
ss136101798	ENSMUSSNP2874625	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151996604 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Rr587516	regulatory region 587516	1925 bp distal
Tssr32405	transcription start site region 32405	636 bp downstream