rs36241298 SNP Detail

Summary

• ID
  rs36241298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66482329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTGGCTC CCTAACCTCT
  TCCTCCAGCT TCAGGAAGGC AGGCCTTAAG AAATGGCTGA TTCTCCTGCA TGCCTAGTCT
  AACCCCTCAA ACTTCCCCCA GCCTGGCAGT TAGTGTCATC CAAATCCCCA AATTCCTCTT
  CTGATATATG AACAGATCAA GGCACTTAGC CCAAATGAGT CCAACTGCAA GGAAACACCA
  Y
  GTTTCAGGAC AGAGTCTCCG GAAGGCCTCG GGCCTGATCT GTTAATGCTA TTGCCATTTT
  GCTTTGAAGA GCTGAGCAAA ATGAAAGCAA GGTGTCTCAC TCACGAGCAG AGGGCGGCCA
  GTACCTTGCA AAGCAGCCAG ATGCCTTTCC CATCCCGCTT GTCATTAACT GCTTCATTTC
  ATTTCATCTG GGATGAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50968262	NES13941308	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36241298					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50968262	NES13941308	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66482329 () rs orientation: forward

Symbol	Name	Function Class
Rr665	regulatory region 665	787 bp proximal
Rr811	regulatory region 811	within coordinates
Rr577849	regulatory region 577849	1349 bp distal
Rr577850	regulatory region 577850	1749 bp proximal