rs36241942 SNP Detail

Summary

• ID
  rs36241942
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:49596136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGTCGTCA GTGGGGTATG
  TGCTGTATGT TCATGAGGTT GGAAATATTT ATGGAGGTTC TGTGAGGAGG TGATGTGGAA
  TTTGGTGAAG GGGAGATGGA GGTGTTCTGT GAGGTGGAGA TGGGGCTCTG CTCTGTCTAA
  AGGGCTCTTT GCTGATTCAA GAAAAGAATG TTATTTTTCC TGTGAGAACC AAATCGGATT
  R
  GCAGTGCATT ACGGGAGAGT CATGATTGGT TTACCTGTGC ACCCAAAGCT GCATGCTTTG
  AAGAAGATAA TAATACATAT TGTTGAAAAT TTGTAACTTG TCAAACCCAG TCAGGAGCTG
  CCCTCGACAT GTTCATGATG CAGCCTTTTC AGAGCTGGCT GTGGTGACTG CTGATGTGTT
  GTCCCCAGTG TGACCTTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51106137	NES14353445	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36241942					SNP	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51106137	NES14353445	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:49596136 () rs orientation: forward

Symbol	Name	Function Class
Ippk	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	within coordinates
Rr276358	regulatory region 276358	265 bp proximal
Rr279503	regulatory region 279503	1185 bp distal