rs36242003 SNP Detail

Summary

• ID
  rs36242003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:98976735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATTTAAT TATAATTTTC
  CTTGTGTAAG ACAAATTAAA GAGGGGAGTA GGAGTGTGGT GCCAAGCACA TTATTTGTCT
  CCTTAACAGA TTGCAGCTCA CCAAACCCCA GAGCTAATGC TGTGGCGGCT GCTCCCAGAA
  GCTGAAAAAA AAAAAAAAGT ACGGGGCAAG AGTGGGAAGA CGGAGGCTTC CAAACGGCAC
  R
  GAGATGTGTG AGCCAGGTGA GAGGCTTGCA CGTCCCACAA CTTTAACATC AACAACGAGA
  ATAATAAAAT CTCTCCCTTT CTCTCGCCAA CCAGTTTTCG CACAAGACAC TTGGAGATCT
  TTTCAGGGAA AAAAATAAAA TCCCCTTGAA AGCTGCTAAC TCAGGCTGGG GTTCACCAGG
  CCGGATGACT GCGCAGTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51381581	NES13732395	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36242003					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51381581	NES13732395	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:98976735 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
6030492E11Rik	RIKEN cDNA 6030492E11 gene			1168 bp upstream
Foxp1	forkhead box P1			Intron
				Noncoding-Transcript-Variant
Rr635313	regulatory region 635313			1560 bp distal
Rr635314	regulatory region 635314			25 bp distal
Rr635315	regulatory region 635315			1886 bp proximal