rs36242207 SNP Detail

Summary

• ID
  rs36242207
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19540986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTGTAAA TCTTGGAGAG
  CACTCTGCAG TCCAAGCACC AGAACACAGG GAGAAGCGGG TAGCTCGTAG GCATCAAATC
  CATGACAGTT ATTGATCATC AGGCCAAAGG CCGTAAGTGG GCCCTGACCT CTGAACAACC
  GTCCCTCCCT TGCCTCGTCC CTGCTAGTTC CTAATCTGCC TTTGCTTGTA CCTTAAGTCA
  Y
  CTACATGTTT AGTCCTCTCC TGCCTTCACT GACATAGGCT CTACTGCCCT GTCTTGGGTA
  TAAAGGCTTT AGCAGCACTG AAGGCACACA GTCTCAGTCA GGATCTTTTC AGTCACCAGA
  ACGGATGCAA GTAAGCAGAG AGGCAGCCAC TATCTACTGC TCAAAATCAG CAGATCTGGG
  TTTGAGTCTC ACTGCCACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51794006	NES14546309	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36242207					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794006	NES14546309	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19540986 () rs orientation: forward

Symbol	Name	Function Class
Gm17799	predicted gene, 17799	1076 bp upstream