rs36242227 SNP Detail

Summary

• ID
  rs36242227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:87407728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGACAA TGGTGAGGAT
  ATGACCTAGC TTACCATTAC AGGAGATGCA TGGGGAGGGA TCAGACTTGG AGACACCCAG
  CCACTCACCC CTTGCACCTC TGCCAGCCTA GAGGAAGACT CAGGCAGCAG AGGACCTGTG
  TCCCCTCAGC AGGCTCTCCC TGCTGGCTGC TGTCATCCAC ATACTCACCT CTTGTGTTTG
  Y
  TCAGTACCAT GCTCGAGGTG AAGACCCAGA GGATCCCAAA CCTAATTCAT CTTGGAACCA
  GTGTCACATG CAGGGTGGAA AATGGGACTT CACTTCTTAT GTTGGCTCCA TCCTCTATAT
  TGTCTAGGAA GTCAGATATG GTTGGTTCAT ATCAACGCGT GTTGGTTTGA TCTCTTCTGA
  TGCAAAACTA GCATAGGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51740620	NES14797044	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36242227					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51740620	NES14797044	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:87407728 () rs orientation: forward

Symbol	Name	Function Class
Bmp10	bone morphogenetic protein 10	within coordinates
Gm66434	predicted gene, 66434	within coordinates
Tssr57543	transcription start site region 57543	1746 bp downstream
Tssr57544	transcription start site region 57544	1659 bp downstream