rs36243179 SNP Detail

Summary

• ID
  rs36243179
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5121295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGCTTCCT GGGTCCACTT AGAAACAAGG CCTTCCCACT
  AGGGAACACA TTCTACTCTT TACCCTGTTG GGGTGAAAGT GGCACCGCTA GAAAAAAATC
  S
  CGGCAGACCC TAGCAGCACG AGGCTATTCA GGTTTGGGGT CCTGGTCAGA GATCACGAGT
  GTGAGATAAC CTCCCCCCCT TATCCTCGCT GACTGTCTTG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50580616	NES13651953	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36243179					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50580616	NES13651953	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5121295 () rs orientation: forward

Symbol	Name	Function Class
Cd248	CD248 antigen, endosialin	627 bp downstream
Cpgi10429	CpG island 10429	260 bp proximal
Cpgi10430	CpG island 10430	651 bp proximal
Gm46658	predicted gene, 46658	959 bp upstream
Rr405800	regulatory region 405800	730 bp upstream
Rr405801	regulatory region 405801	1969 bp upstream
Rr542921	regulatory region 542921	469 bp proximal
Rr542922	regulatory region 542922	973 bp proximal
Tmem151a	transmembrane protein 151A	within coordinates
Tssr154384	transcription start site region 154384	1981 bp downstream
Tssr154385	transcription start site region 154385	1821 bp downstream
Tssr154386	transcription start site region 154386	1562 bp downstream
Tssr154387	transcription start site region 154387	1514 bp downstream
Tssr154388	transcription start site region 154388	1432 bp downstream
Tssr157540	transcription start site region 157540	807 bp downstream
Tssr157541	transcription start site region 157541	842 bp downstream
Tssr157542	transcription start site region 157542	1230 bp downstream